com.dnastack.bob.service.api

Interface BeaconResponseService

public interface BeaconResponseService

Service for managing beacon responses.

Version:

1.0

Author:

Miroslav Cupak (mirocupak@gmail.com)

Method Summary

Modifier and Type	Method and Description
Collection<com.dnastack.bob.service.dto.BeaconResponseDto>	queryAll(String chrom, Long pos, String allele, String ref, com.dnastack.bob.service.dto.UserDto onBehalfOf) Queries all the beacons.
com.dnastack.bob.service.dto.BeaconResponseDto	queryBeacon(String beaconId, String chrom, Long pos, String allele, String ref, com.dnastack.bob.service.dto.UserDto onBehalfOf) Queries a given beacon.
Collection<com.dnastack.bob.service.dto.BeaconResponseDto>	queryBeacons(Collection<String> beaconIds, String chrom, Long pos, String allele, String ref, com.dnastack.bob.service.dto.UserDto onBehalfOf) Queries specified beacons.

Method Detail

queryBeacon

com.dnastack.bob.service.dto.BeaconResponseDto queryBeacon(String beaconId,
                                                           String chrom,
                                                           Long pos,
                                                           String allele,
                                                           String ref,
                                                           com.dnastack.bob.service.dto.UserDto onBehalfOf)
                                                    throws ClassNotFoundException

Queries a given beacon.

Parameters:

beaconId - beacon to query

chrom - chromosome

pos - position

allele - allele

ref - reference genome (optional)

onBehalfOf - user

Returns:

list of beacon responses

Throws:

ClassNotFoundException

queryBeacons

Collection<com.dnastack.bob.service.dto.BeaconResponseDto> queryBeacons(Collection<String> beaconIds,
                                                                        String chrom,
                                                                        Long pos,
                                                                        String allele,
                                                                        String ref,
                                                                        com.dnastack.bob.service.dto.UserDto onBehalfOf)
                                                                 throws ClassNotFoundException

Queries specified beacons.

Parameters:

beaconIds - collection of beacon IDs

chrom - chromosome

pos - position

allele - allele

ref - reference genome (optional)

onBehalfOf - user

Returns:

collection of beacon responses

Throws:

ClassNotFoundException

queryAll

Collection<com.dnastack.bob.service.dto.BeaconResponseDto> queryAll(String chrom,
                                                                    Long pos,
                                                                    String allele,
                                                                    String ref,
                                                                    com.dnastack.bob.service.dto.UserDto onBehalfOf)
                                                             throws ClassNotFoundException

Queries all the beacons.

Parameters:

chrom - chromosome

pos - position

allele - allele

ref - reference genome (optional)

onBehalfOf - user

Returns:

collection of beacon responses

Throws:

ClassNotFoundException