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A

AUTH - Static variable in class com.dnastack.bob.service.impl.BeaconServiceImpl
 

B

BeaconResponseServiceImpl - Class in com.dnastack.bob.service.impl
Implementation of a service for managing beacon responses.
BeaconResponseServiceImpl() - Constructor for class com.dnastack.bob.service.impl.BeaconResponseServiceImpl
 
BeaconServiceImpl - Class in com.dnastack.bob.service.impl
Implementation of a service managing beacons.
BeaconServiceImpl() - Constructor for class com.dnastack.bob.service.impl.BeaconServiceImpl
 
BOB_ID - Static variable in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
Brca - Annotation Type in com.dnastack.bob.service.lrg
BRCA qualifier.
Brca2 - Annotation Type in com.dnastack.bob.service.lrg
BRCA2 qualifier.
Brca2LrgConvertor - Class in com.dnastack.bob.service.lrg
BRCA2 convertor.
Brca2LrgConvertor() - Constructor for class com.dnastack.bob.service.lrg.Brca2LrgConvertor
 
BrcaLrgConvertor - Class in com.dnastack.bob.service.lrg
BRCA convertor.
BrcaLrgConvertor() - Constructor for class com.dnastack.bob.service.lrg.BrcaLrgConvertor
 

C

com.dnastack.bob.service.impl - package com.dnastack.bob.service.impl
 
com.dnastack.bob.service.lrg - package com.dnastack.bob.service.lrg
 
create(BeaconDto) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
create(OrganizationDto) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 

D

delete(String) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
delete(String) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 

F

find(String) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
find(Collection<String>) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
find(String) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 
find(Collection<String>) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 
findAll() - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
findAll() - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 
findVisible(String) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
findVisible(Collection<String>) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
findVisible() - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
findWithVisibleBeacons() - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 
findWithVisibleBeacons(String) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 
findWithVisibleBeacons(Collection<String>) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 
fromString(String) - Static method in enum com.dnastack.bob.service.lrg.LrgLocus
 
fromString(String) - Static method in enum com.dnastack.bob.service.lrg.LrgReference
 

G

getChromosome() - Method in class com.dnastack.bob.service.lrg.Brca2LrgConvertor
 
getChromosome() - Method in class com.dnastack.bob.service.lrg.BrcaLrgConvertor
 
getChromosome() - Method in interface com.dnastack.bob.service.lrg.LrgConvertor
 
getMapping(String, String) - Static method in class com.dnastack.bob.service.lrg.LrgMappingProvider
 
getPosition(long) - Method in class com.dnastack.bob.service.lrg.Brca2LrgConvertor
 
getPosition(long) - Method in class com.dnastack.bob.service.lrg.BrcaLrgConvertor
 
getPosition(long) - Method in interface com.dnastack.bob.service.lrg.LrgConvertor
 
getReference() - Method in class com.dnastack.bob.service.lrg.Brca2LrgConvertor
 
getReference() - Method in class com.dnastack.bob.service.lrg.BrcaLrgConvertor
 
getReference() - Method in interface com.dnastack.bob.service.lrg.LrgConvertor
 

L

LrgConvertor - Interface in com.dnastack.bob.service.lrg
Convertor of LRG queries to standard genome queries.
LrgCoordinates - Class in com.dnastack.bob.service.lrg
Coordinates in LRG:
LrgCoordinates() - Constructor for class com.dnastack.bob.service.lrg.LrgCoordinates
 
LrgLocus - Enum in com.dnastack.bob.service.lrg
Locus IDs.
LrgMapping - Class in com.dnastack.bob.service.lrg
LRG mapping.
LrgMapping(LrgCoordinates, LrgCoordinates) - Constructor for class com.dnastack.bob.service.lrg.LrgMapping
 
LrgMappingProvider - Class in com.dnastack.bob.service.lrg
Service processing mapping based on lrg-sequence.org.
LrgMappingProvider() - Constructor for class com.dnastack.bob.service.lrg.LrgMappingProvider
 
LrgReference - Enum in com.dnastack.bob.service.lrg
Reference specification for LRG queries.

M

mapBackward(LrgCoordinates) - Method in class com.dnastack.bob.service.lrg.LrgMapping
 
mapForward(LrgCoordinates) - Method in class com.dnastack.bob.service.lrg.LrgMapping
 

O

OrganizationServiceImpl - Class in com.dnastack.bob.service.impl
Implementation of a service managing organizations.
OrganizationServiceImpl() - Constructor for class com.dnastack.bob.service.impl.OrganizationServiceImpl
 

P

PARENT_ID - Static variable in class com.dnastack.bob.service.impl.BeaconServiceImpl
 

Q

QUERY_URL - Static variable in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
queryAll(String, Long, String, String, UserDto) - Method in class com.dnastack.bob.service.impl.BeaconResponseServiceImpl
 
queryBeacon(String, String, Long, String, String, UserDto) - Method in class com.dnastack.bob.service.impl.BeaconResponseServiceImpl
 
queryBeacons(Collection<String>, String, Long, String, String, UserDto) - Method in class com.dnastack.bob.service.impl.BeaconResponseServiceImpl
 

T

toString() - Method in enum com.dnastack.bob.service.lrg.LrgLocus
 
toString() - Method in enum com.dnastack.bob.service.lrg.LrgReference
 

U

update(String, BeaconDto) - Method in class com.dnastack.bob.service.impl.BeaconServiceImpl
 
update(String, OrganizationDto) - Method in class com.dnastack.bob.service.impl.OrganizationServiceImpl
 

V

valueOf(String) - Static method in enum com.dnastack.bob.service.lrg.LrgLocus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.dnastack.bob.service.lrg.LrgReference
Returns the enum constant of this type with the specified name.
values() - Static method in enum com.dnastack.bob.service.lrg.LrgLocus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.dnastack.bob.service.lrg.LrgReference
Returns an array containing the constants of this enum type, in the order they are declared.
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