A B C D E F G H I N Q R S T V

A

Allele - Class in com.dnastack.beacon.entity

Allele() - Constructor for class com.dnastack.beacon.entity.Allele

Allele(String, Double) - Constructor for class com.dnastack.beacon.entity.Allele

B

Beacon - Class in com.dnastack.beacon.entity

Beacon.

Beacon() - Constructor for class com.dnastack.beacon.entity.Beacon

Beacon(String, String, String, String, String, String, String, String, List<Dataset>, List<Query>) - Constructor for class com.dnastack.beacon.entity.Beacon

BeaconApplication - Class in com.dnastack.beacon.rest

REST beacon application.

BeaconApplication() - Constructor for class com.dnastack.beacon.rest.BeaconApplication

BeaconResource - Class in com.dnastack.beacon.rest

Beacon rest resource.

BeaconResource() - Constructor for class com.dnastack.beacon.rest.BeaconResource

BeaconResponse - Class in com.dnastack.beacon.entity

Beacon response.

BeaconResponse() - Constructor for class com.dnastack.beacon.entity.BeaconResponse

BeaconResponse(String, Query, Response) - Constructor for class com.dnastack.beacon.entity.BeaconResponse

BeaconService - Interface in com.dnastack.beacon.service

Beacon service.

C

Chromosome - Enum in com.dnastack.beacon.entity

Chromosome.

com.dnastack.beacon.entity - package com.dnastack.beacon.entity

com.dnastack.beacon.rest - package com.dnastack.beacon.rest

com.dnastack.beacon.service - package com.dnastack.beacon.service

com.dnastack.beacon.util - package com.dnastack.beacon.util

D

Dataset - Class in com.dnastack.beacon.entity

Data set.

Dataset() - Constructor for class com.dnastack.beacon.entity.Dataset

Dataset(String, String, String, DataSize, List<DataUse>) - Constructor for class com.dnastack.beacon.entity.Dataset

DataSize - Class in com.dnastack.beacon.entity

DataSize() - Constructor for class com.dnastack.beacon.entity.DataSize

DataSize(Integer, Integer) - Constructor for class com.dnastack.beacon.entity.DataSize

DataUse - Class in com.dnastack.beacon.entity

Data use limitations.

DataUse() - Constructor for class com.dnastack.beacon.entity.DataUse

DataUse(String, String, List<DataUseRequirement>) - Constructor for class com.dnastack.beacon.entity.DataUse

DataUseRequirement - Class in com.dnastack.beacon.entity

Data use requirement.

DataUseRequirement() - Constructor for class com.dnastack.beacon.entity.DataUseRequirement

DataUseRequirement(String, String) - Constructor for class com.dnastack.beacon.entity.DataUseRequirement

E

equals(Object) - Method in class com.dnastack.beacon.entity.Beacon

equals(Object) - Method in class com.dnastack.beacon.entity.BeaconResponse

Error - Class in com.dnastack.beacon.entity

Error.

Error() - Constructor for class com.dnastack.beacon.entity.Error

Error(String, String) - Constructor for class com.dnastack.beacon.entity.Error

F

fromString(String) - Static method in enum com.dnastack.beacon.entity.Chromosome

fromString(String) - Static method in enum com.dnastack.beacon.entity.Reference

G

getAllele() - Method in class com.dnastack.beacon.entity.Allele

getAllele() - Method in class com.dnastack.beacon.entity.Query

getAlleles() - Method in class com.dnastack.beacon.entity.Response

getApi() - Method in class com.dnastack.beacon.entity.Beacon

getAuth() - Method in class com.dnastack.beacon.entity.Beacon

getBeacon_id() - Method in class com.dnastack.beacon.entity.BeaconResponse

getCategory() - Method in class com.dnastack.beacon.entity.DataUse

getChromosome() - Method in class com.dnastack.beacon.entity.Query

getClasses() - Method in class com.dnastack.beacon.rest.BeaconApplication

getData_uses() - Method in class com.dnastack.beacon.entity.Dataset

getDataset_id() - Method in class com.dnastack.beacon.entity.Query

getDatasets() - Method in class com.dnastack.beacon.entity.Beacon

getDescription() - Method in class com.dnastack.beacon.entity.Beacon

getDescription() - Method in class com.dnastack.beacon.entity.Dataset

getDescription() - Method in class com.dnastack.beacon.entity.DataUse

getDescription() - Method in class com.dnastack.beacon.entity.DataUseRequirement

getDescription() - Method in class com.dnastack.beacon.entity.Error

getEmail() - Method in class com.dnastack.beacon.entity.Beacon

getError() - Method in class com.dnastack.beacon.entity.Response

getExists() - Method in class com.dnastack.beacon.entity.Response

getFrequency() - Method in class com.dnastack.beacon.entity.Allele

getHomepage() - Method in class com.dnastack.beacon.entity.Beacon

getId() - Method in class com.dnastack.beacon.entity.Beacon

getId() - Method in class com.dnastack.beacon.entity.Dataset

getInfo() - Method in class com.dnastack.beacon.entity.Response

getName() - Method in class com.dnastack.beacon.entity.Beacon

getName() - Method in class com.dnastack.beacon.entity.DataUseRequirement

getName() - Method in class com.dnastack.beacon.entity.Error

getObserved() - Method in class com.dnastack.beacon.entity.Response

getOrganization() - Method in class com.dnastack.beacon.entity.Beacon

getPosition() - Method in class com.dnastack.beacon.entity.Query

getQueries() - Method in class com.dnastack.beacon.entity.Beacon

getQuery() - Method in class com.dnastack.beacon.entity.BeaconResponse

getQuery(String, Long, String, String, String) - Static method in class com.dnastack.beacon.util.QueryUtils

Obtains a canonical query object.

getReference() - Method in class com.dnastack.beacon.entity.Dataset

getReference() - Method in class com.dnastack.beacon.entity.Query

getRequirements() - Method in class com.dnastack.beacon.entity.DataUse

getResponse() - Method in class com.dnastack.beacon.entity.BeaconResponse

getSamples() - Method in class com.dnastack.beacon.entity.DataSize

getSize() - Method in class com.dnastack.beacon.entity.Dataset

getVariants() - Method in class com.dnastack.beacon.entity.DataSize

H

hashCode() - Method in class com.dnastack.beacon.entity.Beacon

hashCode() - Method in class com.dnastack.beacon.entity.BeaconResponse

I

info() - Method in interface com.dnastack.beacon.service.BeaconService

Obtains beacon information.

info() - Method in class com.dnastack.beacon.service.SampleBeaconService

InfoResource - Class in com.dnastack.beacon.rest

Beacon rest resource.

InfoResource() - Constructor for class com.dnastack.beacon.rest.InfoResource

init() - Method in class com.dnastack.beacon.service.SampleBeaconService

N

normalizeAllele(String) - Static method in class com.dnastack.beacon.util.QueryUtils

Generate a canonical allele string.

normalizeChromosome(String) - Static method in class com.dnastack.beacon.util.QueryUtils

Generates a canonical chrom ID.

normalizePosition(Long) - Static method in class com.dnastack.beacon.util.QueryUtils

Converts 0-based position to 1-based position.

normalizeReference(String) - Static method in class com.dnastack.beacon.util.QueryUtils

Generate a canonical genome representation (hg*).

Q

Query - Class in com.dnastack.beacon.entity

Query.

Query(String, Chromosome, Long, Reference, String) - Constructor for class com.dnastack.beacon.entity.Query

Query() - Constructor for class com.dnastack.beacon.entity.Query

query(String, Long, String, String, String) - Method in class com.dnastack.beacon.rest.BeaconResource

query(String, Long, String, String, String) - Method in interface com.dnastack.beacon.service.BeaconService

Executes a query.

query(String, Long, String, String, String) - Method in class com.dnastack.beacon.service.SampleBeaconService

QueryUtils - Class in com.dnastack.beacon.util

Utils for query manipulation.

QueryUtils() - Constructor for class com.dnastack.beacon.util.QueryUtils

R

Reference - Enum in com.dnastack.beacon.entity

Genome.

Response - Class in com.dnastack.beacon.entity

Response.

Response(Boolean, Integer, List<Allele>, String, Error) - Constructor for class com.dnastack.beacon.entity.Response

Response() - Constructor for class com.dnastack.beacon.entity.Response

S

SampleBeaconService - Class in com.dnastack.beacon.service

Sample implementation of a beacon service.

SampleBeaconService() - Constructor for class com.dnastack.beacon.service.SampleBeaconService

setAllele(String) - Method in class com.dnastack.beacon.entity.Allele

setAllele(String) - Method in class com.dnastack.beacon.entity.Query

setAlleles(List<Allele>) - Method in class com.dnastack.beacon.entity.Response

setApi(String) - Method in class com.dnastack.beacon.entity.Beacon

setAuth(String) - Method in class com.dnastack.beacon.entity.Beacon

setBeacon_id(String) - Method in class com.dnastack.beacon.entity.BeaconResponse

setCategory(String) - Method in class com.dnastack.beacon.entity.DataUse

setChromosome(Chromosome) - Method in class com.dnastack.beacon.entity.Query

setData_uses(List<DataUse>) - Method in class com.dnastack.beacon.entity.Dataset

setDataset_id(String) - Method in class com.dnastack.beacon.entity.Query

setDatasets(List<Dataset>) - Method in class com.dnastack.beacon.entity.Beacon

setDescription(String) - Method in class com.dnastack.beacon.entity.Beacon

setDescription(String) - Method in class com.dnastack.beacon.entity.Dataset

setDescription(String) - Method in class com.dnastack.beacon.entity.DataUse

setDescription(String) - Method in class com.dnastack.beacon.entity.DataUseRequirement

setDescription(String) - Method in class com.dnastack.beacon.entity.Error

setEmail(String) - Method in class com.dnastack.beacon.entity.Beacon

setError(Error) - Method in class com.dnastack.beacon.entity.Response

setExists(Boolean) - Method in class com.dnastack.beacon.entity.Response

setFrequency(Double) - Method in class com.dnastack.beacon.entity.Allele

setHomepage(String) - Method in class com.dnastack.beacon.entity.Beacon

setId(String) - Method in class com.dnastack.beacon.entity.Beacon

setId(String) - Method in class com.dnastack.beacon.entity.Dataset

setInfo(String) - Method in class com.dnastack.beacon.entity.Response

setName(String) - Method in class com.dnastack.beacon.entity.Beacon

setName(String) - Method in class com.dnastack.beacon.entity.DataUseRequirement

setName(String) - Method in class com.dnastack.beacon.entity.Error

setObserved(Integer) - Method in class com.dnastack.beacon.entity.Response

setOrganization(String) - Method in class com.dnastack.beacon.entity.Beacon

setPosition(Long) - Method in class com.dnastack.beacon.entity.Query

setQueries(List<Query>) - Method in class com.dnastack.beacon.entity.Beacon

setQuery(Query) - Method in class com.dnastack.beacon.entity.BeaconResponse

setReference(String) - Method in class com.dnastack.beacon.entity.Dataset

setReference(Reference) - Method in class com.dnastack.beacon.entity.Query

setRequirements(List<DataUseRequirement>) - Method in class com.dnastack.beacon.entity.DataUse

setResponse(Response) - Method in class com.dnastack.beacon.entity.BeaconResponse

setSamples(Integer) - Method in class com.dnastack.beacon.entity.DataSize

setSize(DataSize) - Method in class com.dnastack.beacon.entity.Dataset

setVariants(Integer) - Method in class com.dnastack.beacon.entity.DataSize

show() - Method in class com.dnastack.beacon.rest.InfoResource

T

toString() - Method in class com.dnastack.beacon.entity.Beacon

toString() - Method in class com.dnastack.beacon.entity.BeaconResponse

toString() - Method in enum com.dnastack.beacon.entity.Chromosome

toString() - Method in enum com.dnastack.beacon.entity.Reference

V

valueOf(String) - Static method in enum com.dnastack.beacon.entity.Chromosome

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum com.dnastack.beacon.entity.Reference

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.dnastack.beacon.entity.Chromosome

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum com.dnastack.beacon.entity.Reference

Returns an array containing the constants of this enum type, in the order they are declared.

A B C D E F G H I N Q R S T V