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A

AlleleResourceImpl - Class in com.dnastack.bob.rest.resource
Allele rest resource.
AlleleResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.AlleleResourceImpl
 

B

BeaconApplication - Class in com.dnastack.bob.rest.app
REST application.
BeaconApplication() - Constructor for class com.dnastack.bob.rest.app.BeaconApplication
 
BeaconDtoComparator - Interface in com.dnastack.bob.rest.comparator
Comparator of BeaconDto objects.
BeaconDtoIdComparator - Class in com.dnastack.bob.rest.comparator
Comparator of BeaconDto objects.
BeaconDtoIdComparator() - Constructor for class com.dnastack.bob.rest.comparator.BeaconDtoIdComparator
 
BeaconDtoNameComparator - Class in com.dnastack.bob.rest.comparator
Comparator of BeaconDto objects.
BeaconDtoNameComparator() - Constructor for class com.dnastack.bob.rest.comparator.BeaconDtoNameComparator
 
BeaconResourceImpl - Class in com.dnastack.bob.rest.resource
Query rest resource.
BeaconResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.BeaconResourceImpl
 
BeaconResponseDtoComparator - Class in com.dnastack.bob.rest.comparator
Comparator of BeaconResponseDto objects.
BeaconResponseDtoComparator() - Constructor for class com.dnastack.bob.rest.comparator.BeaconResponseDtoComparator
 
BeaconResponseResourceImpl - Class in com.dnastack.bob.rest.resource
Query rest resource.
BeaconResponseResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.BeaconResponseResourceImpl
 

C

ChromosomeResourceImpl - Class in com.dnastack.bob.rest.resource
Chromosome rest resource.
ChromosomeResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.ChromosomeResourceImpl
 
com.dnastack.bob.rest.app - package com.dnastack.bob.rest.app
 
com.dnastack.bob.rest.comparator - package com.dnastack.bob.rest.comparator
 
com.dnastack.bob.rest.resource - package com.dnastack.bob.rest.resource
 
com.dnastack.bob.rest.util - package com.dnastack.bob.rest.util
 
compare(BeaconDto, BeaconDto) - Method in class com.dnastack.bob.rest.comparator.BeaconDtoIdComparator
 
compare(BeaconDto, BeaconDto) - Method in class com.dnastack.bob.rest.comparator.BeaconDtoNameComparator
 
compare(BeaconResponseDto, BeaconResponseDto) - Method in class com.dnastack.bob.rest.comparator.BeaconResponseDtoComparator
 
compare(OrganizationDto, OrganizationDto) - Method in class com.dnastack.bob.rest.comparator.OrganizationDtoIdComparator
 
compare(OrganizationDto, OrganizationDto) - Method in class com.dnastack.bob.rest.comparator.OrganizationDtoNameComparator
 
create(UriInfo, BeaconDto) - Method in class com.dnastack.bob.rest.resource.BeaconResourceImpl
 
create(UriInfo, OrganizationDto) - Method in class com.dnastack.bob.rest.resource.OrganizationResourceImpl
 

D

delete(UriInfo, String) - Method in class com.dnastack.bob.rest.resource.BeaconResourceImpl
 
delete(UriInfo, String) - Method in class com.dnastack.bob.rest.resource.OrganizationResourceImpl
 

E

Error - Class in com.dnastack.bob.rest.util
Application error.
Error() - Constructor for class com.dnastack.bob.rest.util.Error
 
ExceptionHandler - Class in com.dnastack.bob.rest.util
Handler of DataAccessException hierarchy.
ExceptionHandler() - Constructor for class com.dnastack.bob.rest.util.ExceptionHandler
 
extractIpAddress(HttpServletRequest) - Static method in class com.dnastack.bob.rest.util.IpExtractor
Extracts client's IP address from HTTP headers.

F

filter(ContainerRequestContext) - Method in class com.dnastack.bob.rest.util.LoggingFilter
 

G

getClasses() - Method in class com.dnastack.bob.rest.app.BeaconApplication
 
getCollection() - Method in class com.dnastack.bob.rest.util.JaxbList
 
getMediaType(HttpHeaders) - Static method in class com.dnastack.bob.rest.util.MediaTypeResolver
Determines whether to use JSON (default) or XML.
getSingletons() - Method in class com.dnastack.bob.rest.app.BeaconApplication
 
getStatus(Exception) - Static method in class com.dnastack.bob.rest.util.ResponseStatusMapper
Retrieves Response.Status from a given exception according to the static mapping.

I

IdComparator - Annotation Type in com.dnastack.bob.rest.comparator
Comparator using IDs.
IpExtractor - Class in com.dnastack.bob.rest.util
IP address extractor.

J

JaxbList<T> - Class in com.dnastack.bob.rest.util
List wrapper used for serialization into XML.
JaxbList() - Constructor for class com.dnastack.bob.rest.util.JaxbList
 
JaxbList(List<T>) - Constructor for class com.dnastack.bob.rest.util.JaxbList
 
JaxbList(T[]) - Constructor for class com.dnastack.bob.rest.util.JaxbList
 

L

LoggingFilter - Class in com.dnastack.bob.rest.util
Filter logging IP addresses requests coming to the REST API.
LoggingFilter() - Constructor for class com.dnastack.bob.rest.util.LoggingFilter
 

M

MediaTypeResolver - Class in com.dnastack.bob.rest.util
Utility determining the media type to use in a response.

N

NameComparator - Annotation Type in com.dnastack.bob.rest.comparator
Comparator using names.

O

OrganizationDtoComparator - Interface in com.dnastack.bob.rest.comparator
Comparator of OrganizationDto objects.
OrganizationDtoIdComparator - Class in com.dnastack.bob.rest.comparator
Comparator of OrganizationDto objects.
OrganizationDtoIdComparator() - Constructor for class com.dnastack.bob.rest.comparator.OrganizationDtoIdComparator
 
OrganizationDtoNameComparator - Class in com.dnastack.bob.rest.comparator
Comparator of OrganizationDto objects.
OrganizationDtoNameComparator() - Constructor for class com.dnastack.bob.rest.comparator.OrganizationDtoNameComparator
 
OrganizationResourceImpl - Class in com.dnastack.bob.rest.resource
Organization rest resource.
OrganizationResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.OrganizationResourceImpl
 

P

parameterHasMultipleValidValue(String) - Static method in class com.dnastack.bob.rest.util.ParameterParser
Checks if there are multiple values given as a parameter.
parameterHasSingleValidValue(String) - Static method in class com.dnastack.bob.rest.util.ParameterParser
Checks if there is a single value given for the specified parameter.
ParameterParser - Class in com.dnastack.bob.rest.util
Parsing utils for request parameters.
parseMultipleParameterValues(String) - Static method in class com.dnastack.bob.rest.util.ParameterParser
Extract multiple values of a single parameter using "," as a delimiter and "[]" as borders.

Q

query(String, String, Long, String, String) - Method in class com.dnastack.bob.rest.resource.BeaconResponseResourceImpl
 
queryBeacon(String, String, Long, String, String) - Method in class com.dnastack.bob.rest.resource.BeaconResponseResourceImpl
 

R

ReferenceResourceImpl - Class in com.dnastack.bob.rest.resource
Reference rest resource.
ReferenceResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.ReferenceResourceImpl
 
ResponseStatusMapper - Class in com.dnastack.bob.rest.util
Maps DAO exceptions to JAX-RS response codes.
RestEndPointResourceImpl - Class in com.dnastack.bob.rest.resource
Information/help rest resource.
RestEndPointResourceImpl() - Constructor for class com.dnastack.bob.rest.resource.RestEndPointResourceImpl
 

S

show(String) - Method in class com.dnastack.bob.rest.resource.BeaconResourceImpl
 
show(String) - Method in class com.dnastack.bob.rest.resource.OrganizationResourceImpl
 
showAll() - Method in class com.dnastack.bob.rest.resource.AlleleResourceImpl
 
showAll() - Method in class com.dnastack.bob.rest.resource.ChromosomeResourceImpl
 
showAll() - Method in class com.dnastack.bob.rest.resource.ReferenceResourceImpl
 
showBeacon(String) - Method in class com.dnastack.bob.rest.resource.BeaconResourceImpl
 
showEndPoints() - Method in class com.dnastack.bob.rest.resource.RestEndPointResourceImpl
 
showOrganization(String) - Method in class com.dnastack.bob.rest.resource.OrganizationResourceImpl
 

T

toResponse(Exception) - Method in class com.dnastack.bob.rest.util.ExceptionHandler
 

U

update(UriInfo, String, BeaconDto) - Method in class com.dnastack.bob.rest.resource.BeaconResourceImpl
 
update(UriInfo, String, OrganizationDto) - Method in class com.dnastack.bob.rest.resource.OrganizationResourceImpl
 
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